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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
84
DNA binding
28
DNA accessibility
Target of assay
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
27
May, 2020
20
May, 2022
17
December, 2017
16
November, 2017
14
August, 2017
6
August, 2021
6
October, 2019
3
November, 2018
2
June, 2019
1
February, 2021
Available data
355
bam
289
bigWig
174
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
112
Homo sapiens
Biosample type
74
tissue
20
cell line
12
in vitro differentiated cells
6
primary cell
Organ
201
pancreas
200
brain
174
heart
174
kidney
142
epithelium
124
vasculature
121
blood vessel
112
liver
92
limb
69
artery
60
musculature of body
52
connective tissue
32
eye
27
nerve
18
ureter
13
vein
11
embryo
8
adipose tissue
8
bone element
8
skeleton
8
spleen
3
blood
3
bodily fluid
1
pituitary gland
Project
112
AMP
Genome assembly (visualization)
112
hg19
81
GRCh38
Lab
89
AMP-T2D consortium
20
Karen Mohlke, UNC
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
mammary gland
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
112 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
liver
45
20
2
right lobe of liver
5
1
1
cell line
HepG2
19
1
in vitro differentiated cells
hepatocyte
12
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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