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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
7
ChIP-seq
6
total RNA-seq
3
RRBS
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
19
DNA accessibility
7
DNA binding
6
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
control
5
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
24
May, 2022
5
August, 2017
4
November, 2017
1
August, 2018
1
December, 2017
1
December, 2018
1
March, 2019
1
November, 2018
1
October, 2017
Available data
bigWig
2509
bam
1522
bed narrowPeak
1329
tsv
933
bigBed narrowPeak
797
fastq
273
bed broadPeak
236
bigBed broadPeak
232
tagAlign
227
bed bed3+
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
39
Homo sapiens
Biosample type
primary cell
31
tissue
6
cell line
2
in vitro differentiated cells
Organ
25
pancreas
8
liver
2
adipose tissue
2
connective tissue
2
musculature of body
1
brain
1
embryo
Project
39
AMP
Genome assembly (visualization)
21
hg19
Lab
24
Kyle Gaulton, UCSD
14
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
3
missing controlled_by
organ_slims!
mammary gland
target.investigated_as!
control
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
RRBS
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans
19
6
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
cell line
HepG2
5
1
in vitro differentiated cells
pancreatic endoderm
1
white fat cell
1
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