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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
ChIP-seq
189
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
456
DNA binding
193
Transcription
31
DNA accessibility
9
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
344
transcription factor
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
259
November, 2017
171
May, 2020
59
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
30
August, 2021
11
January, 2019
10
July, 2019
7
October, 2019
5
December, 2019
4
December, 2018
4
March, 2020
3
February, 2021
2
June, 2019
1
February, 2020
1
October, 2017
Available data
625
bigWig
596
bam
455
bed narrowPeak
404
fastq
371
bigBed narrowPeak
175
tsv
64
bed broadPeak
64
bigBed broadPeak
58
tagAlign
13
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
700
Homo sapiens
Biosample type
341
cell line
332
tissue
14
in vitro differentiated cells
13
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
700
AMP
Genome assembly (visualization)
625
hg19
546
GRCh38
Lab
633
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
mammary gland
target.investigated_as!
control
BIOSAMPLE
ASSAY
700 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
1
2
2
2
1
tissue
liver
102
167
20
2
3
1
1
1
1
1
spleen
12
1
1
2
1
right lobe of liver
7
3
1
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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