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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
32
ATAC-seq
21
ChIP-seq
6
WGBS
Assay category
147
Transcription
32
DNA accessibility
21
DNA binding
6
DNA methylation
Target of assay
51
histone
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
40
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
19
September, 2020
15
August, 2017
7
August, 2020
6
February, 2021
5
December, 2017
5
September, 2017
4
November, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
224
bam
211
bigWig
206
fastq
156
tsv
80
zippedFastqFolder
63
bed narrowPeak
47
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
206
Homo sapiens
Biosample type
201
primary cell
5
in vitro differentiated cells
Organ
420
liver
371
pancreas
206
epithelium
75
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
137
AMP
69
HPAP
Genome assembly (visualization)
130
GRCh38
122
hg19
Lab
137
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
organ_slims!
mammary gland
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
primary cell
pancreatic alpha cell
52
12
13
6
6
pancreatic beta cell
21
12
10
6
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
+ See 5 more…
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
See all biosamples
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