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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
72
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
3159
bam
2925
bigWig
1591
tsv
1581
bed narrowPeak
1344
fastq
819
bigBed narrowPeak
383
tagAlign
160
txt
153
zippedFastqFolder
103
bed broadPeak
79
bigBed broadPeak
68
bed bed3+
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
159
Homo sapiens
Biosample type
156
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
musculature of body
Project
160
AMP
Genome assembly (visualization)
3
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
organ_slims!
musculature of body
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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