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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1741
ChIP-seq
1397
total RNA-seq
488
ATAC-seq
353
single cell RNA-seq
176
DNase-seq
83
snATAC-seq
74
WGBS
47
pCHi-C
23
Hi-C
16
small RNA-seq
14
RRBS
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
3D chromatin structure
Date released
6
March, 2020
4
July, 2019
3
August, 2021
3
October, 2019
3
October, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
16
hic
13
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
23
Homo sapiens
Biosample type
10
primary cell
10
tissue
3
cell line
Organ
8
pancreas
7
epithelium
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
19
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
2
GRCh38
Lab
15
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
musculature of body
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
23 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
tissue
islet of Langerhans
3
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
cell line
HepG2
2
Panc1
1
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