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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
899
total RNA-seq
545
ChIP-seq
158
ATAC-seq
145
DNase-seq
15
WGBS
15
small RNA-seq
Assay category
914
Transcription
545
DNA binding
303
DNA accessibility
15
DNA methylation
Target of assay
454
histone modification
453
histone
235
narrow histone mark
218
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
162
May, 2020
161
October, 2019
158
August, 2017
131
June, 2019
116
July, 2018
87
May, 2019
64
April, 2019
64
August, 2021
58
July, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
7
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1661
bam
1630
bigWig
913
tsv
806
bed narrowPeak
518
bigBed narrowPeak
280
fastq
172
bed bed3+
159
bed broadPeak
144
bigBed broadPeak
116
tagAlign
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
tagAlign bed3+
Organism
1771
Homo sapiens
Biosample type
1777
tissue
525
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
165
kidney
151
heart
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
Project
1775
AMP
2
T1D
Genome assembly (visualization)
1777
GRCh38
1694
hg19
Lab
1699
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1777 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
22
1
liver
147
75
2
1
kidney
20
75
13
bone tissue
58
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