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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
1
pCHi-C
Assay category
13
3D chromatin structure
Date released
6
March, 2020
3
October, 2022
2
August, 2021
1
August, 2018
1
November, 2019
1
October, 2019
Available data
3042
bam
2847
bigWig
1632
bed narrowPeak
1441
tsv
1255
fastq
929
bigBed narrowPeak
380
tagAlign
273
bed broadPeak
249
bigBed broadPeak
219
bed bed3+
153
zippedFastqFolder
75
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
14
Homo sapiens
Biosample type
8
tissue
4
primary cell
1
cell line
1
in vitro differentiated cells
Organ
6
pancreas
4
epithelium
3
heart
2
blood vessel
2
liver
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
11
AMP
3
HPAP
Genome assembly (visualization)
12
hg19
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
organ_slims!
musculature of body
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
14 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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