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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
836
ChIP-seq
248
ATAC-seq
146
DNase-seq
117
single cell RNA-seq
87
RNA microarray
26
WGBS
23
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
7
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1157
Transcription
836
DNA binding
405
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
566
histone modification
565
histone
298
narrow histone mark
267
broad histone mark
183
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
131
June, 2019
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
70
July, 2019
64
May, 2022
48
December, 2017
40
November, 2019
39
May, 2021
31
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1861
bam
1673
bigWig
1069
tsv
891
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2550
Homo sapiens
Biosample type
2558
tissue
651
cell line
545
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
475
pancreas
361
liver
273
heart
265
brain
252
kidney
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2558
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1775
GRCh38
1692
hg19
Lab
2339
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2558 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
69
57
1
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
bone element
84
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