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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
19
ChIP-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA binding
Target of assay
12
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
18
August, 2021
1
November, 2017
Available data
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
19
Homo sapiens
Biosample type
163
tissue
52
in vitro differentiated cells
37
primary cell
19
cell line
Organ
19
liver
Project
19
AMP
Genome assembly (visualization)
14
hg19
Lab
18
Bing Ren, UCSD
1
AMP-T2D consortium
organ_slims!
musculature of body
files.file_type!
bam
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
cell line
HepG2
19
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