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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
40
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
40
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
12
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
290
October, 2019
263
August, 2017
224
May, 2021
198
May, 2022
191
August, 2021
185
February, 2023
154
February, 2021
152
May, 2020
113
May, 2019
80
April, 2019
79
December, 2017
79
November, 2018
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
41
November, 2019
40
May, 2024
35
December, 2018
33
July, 2019
25
January, 2019
24
February, 2018
23
October, 2017
21
June, 2019
19
April, 2020
17
March, 2020
16
January, 2021
15
May, 2023
11
November, 2020
9
September, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
106
bed narrowPeak
64
xls
57
txt
49
bam
47
bigWig
24
tagAlign
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
190
Homo sapiens
Biosample type
130
tissue
33
in vitro differentiated cells
27
cell line
1
primary cell
Organ
130
kidney
23
liver
3
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
191
AMP
Genome assembly (visualization)
87
GRCh38
40
hg19
Lab
128
Katalin Susztak, Upenn
35
AMP-T2D consortium
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
musculature of body
files.file_type!
bed bed3+
tsv
BIOSAMPLE
ASSAY
191 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
osteoblast
1
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
1
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