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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1527
total RNA-seq
1045
ChIP-seq
503
ATAC-seq
362
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
56
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
74
DNA methylation
Date released
41
May, 2022
11
July, 2019
9
August, 2017
9
February, 2021
7
November, 2018
Available data
41
zippedFastqFolder
17
bam
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
9
tsv
Organism
77
Homo sapiens
Biosample type
47
primary cell
29
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
3
kidney
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
47
HPAP
30
AMP
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
30
AMP-T2D consortium
organ_slims!
musculature of body
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
77 results
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WGBS
snDrop-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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cell line
HepG2
1
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