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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
467
ChIP-seq
256
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1220
Transcription
467
DNA binding
284
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
262
histone modification
261
histone
194
narrow histone mark
183
control
67
broad histone mark
24
transcription factor
3
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
236
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
68
July, 2019
64
May, 2022
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
29
October, 2018
25
November, 2017
23
February, 2020
21
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2129
Homo sapiens
Biosample type
2132
tissue
974
primary cell
377
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
212
kidney
185
heart
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2035
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1259
GRCh38
1239
hg19
Lab
1820
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
8
audit script error
Audit category:
23
missing controlled_by
organ_slims!
musculature of body
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
2132 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
71
68
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
1
kidney
49
9
75
64
6
1
1
bone element
84
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