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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
838
ChIP-seq
258
ATAC-seq
146
DNase-seq
106
total RNA-seq
85
RNA microarray
70
single cell RNA-seq
27
snATAC-seq
26
WGBS
10
Hi-C
7
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
838
DNA binding
435
DNA accessibility
176
Transcription
33
DNA methylation
10
3D chromatin structure
Target of assay
568
histone modification
567
histone
300
narrow histone mark
267
broad histone mark
183
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
169
August, 2017
131
June, 2019
130
August, 2021
108
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
64
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
26
November, 2018
25
July, 2019
23
October, 2017
21
November, 2019
19
April, 2020
15
May, 2023
10
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2018
Available data
1863
bam
1675
bigWig
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1577
Homo sapiens
Biosample type
1586
tissue
806
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
162
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1489
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
864
GRCh38
780
hg19
Lab
1275
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
files.file_type!
tsv
BIOSAMPLE
ASSAY
1586 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
liver
145
20
2
20
1
3
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
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