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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
536
ChIP-seq
208
ATAC-seq
145
DNase-seq
4
FAIRE-seq
Assay category
536
DNA binding
357
DNA accessibility
Target of assay
466
histone modification
465
histone
244
narrow histone mark
221
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
151
October, 2019
131
June, 2019
87
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
58
November, 2017
53
August, 2017
45
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
887
Homo sapiens
Biosample type
893
tissue
404
cell line
286
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
153
kidney
133
heart
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
891
AMP
2
T1D
Genome assembly (visualization)
806
GRCh38
726
hg19
Lab
791
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
893 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
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