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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
2
FAIRE-seq
1
RRBS
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
11
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
173
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1863
bam
1675
bigWig
1069
tsv
893
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
368
Homo sapiens
Biosample type
427
cell line
409
primary cell
375
tissue
141
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
musculature of body
Project
375
AMP
Genome assembly (visualization)
292
hg19
280
GRCh38
Lab
349
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
RRBS
tissue
islet of Langerhans
28
103
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
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