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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
664
ChIP-seq
145
DNase-seq
61
ATAC-seq
17
WGBS
15
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
1
RRBS
Assay category
919
Transcription
664
DNA binding
210
DNA accessibility
18
DNA methylation
Target of assay
504
histone modification
503
histone
261
narrow histone mark
242
broad histone mark
93
transcription factor
67
control
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
180
August, 2017
170
May, 2020
160
October, 2019
131
June, 2019
116
July, 2018
87
May, 2019
72
October, 2018
65
April, 2019
60
July, 2019
57
November, 2017
48
December, 2017
44
May, 2022
40
May, 2024
38
May, 2021
26
November, 2018
19
November, 2019
17
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
January, 2018
1
March, 2019
Available data
1863
bam
1715
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1804
Homo sapiens
Biosample type
1811
tissue
776
primary cell
577
cell line
283
in vitro differentiated cells
4
stem cell
Organ
501
connective tissue
443
adipose tissue
416
pancreas
287
liver
205
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
musculature of body
58
bone element
31
nerve
27
artery
24
spleen
18
ureter
3
eye
1
pituitary gland
Project
1809
AMP
2
T1D
Genome assembly (visualization)
1673
GRCh38
1613
hg19
Lab
1725
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1811 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
adipose tissue
381
2
2
3
islet of Langerhans
266
36
1
22
6
1
liver
147
99
2
20
1
1
1
bone tissue
58
body of pancreas
2
34
4
4
2
2
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