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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
97
total RNA-seq
28
ATAC-seq
9
WGBS
7
DNase-seq
6
single cell RNA-seq
2
FAIRE-seq
Assay category
143
DNA binding
103
Transcription
37
DNA accessibility
9
DNA methylation
Target of assay
56
histone
56
histone modification
47
control
40
transcription factor
35
broad histone mark
21
narrow histone mark
13
RNA binding protein
3
other context
3
other post-translational modification
Date released
145
August, 2017
58
October, 2018
24
May, 2022
19
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1575
bam
1450
bigWig
915
tsv
820
bed narrowPeak
474
bigBed narrowPeak
292
fastq
166
bed bed3+
165
bed broadPeak
156
txt
153
tagAlign
141
bigBed broadPeak
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
285
Homo sapiens
Biosample type
409
primary cell
292
tissue
126
in vitro differentiated cells
60
cell line
4
stem cell
Organ
213
pancreas
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
musculature of body
Project
292
AMP
Genome assembly (visualization)
229
hg19
218
GRCh38
Lab
266
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
liver
BIOSAMPLE
ASSAY
292 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
omental fat pad
11
1
1
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