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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
13
Transcription
3
DNA accessibility
Date released
89
February, 2021
8
August, 2021
3
February, 2023
1
October, 2022
Available data
2051
bam
1781
bigWig
1717
bed narrowPeak
1113
fastq
995
bigBed narrowPeak
383
tagAlign
276
bed broadPeak
276
tsv
252
bigBed broadPeak
237
bed bed3+
153
zippedFastqFolder
101
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
100
Homo sapiens
Biosample type
97
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
13
kidney
musculature of body
Project
101
AMP
Genome assembly (visualization)
3
hg19
Lab
90
AMP-T2D consortium
8
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
organ_slims!
musculature of body
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
101 results
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RNA microarray
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
13
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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