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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1678
ChIP-seq
1412
total RNA-seq
496
ATAC-seq
362
single cell RNA-seq
179
DNase-seq
87
RNA microarray
74
WGBS
65
snATAC-seq
39
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
5
DNA accessibility
Date released
84
February, 2021
2
December, 2019
2
July, 2019
1
August, 2017
1
August, 2021
1
November, 2018
1
October, 2019
Available data
84
txt
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
2
tsv
1
tar
Organism
91
Homo sapiens
Biosample type
91
tissue
1
primary cell
Organ
84
bone element
3
kidney
2
epithelium
2
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
connective tissue
1
vasculature
1
vein
Project
92
AMP
Genome assembly (visualization)
5
hg19
Lab
92
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
musculature of body
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
92 results
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RNA microarray
FAIRE-seq
tissue
bone element
84
frontal cortex
1
islet of Langerhans
1
kidney
1
kidney interstitium
1
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primary cell
endothelial cell of umbilical vein
1
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