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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
150
ATAC-seq
102
single cell RNA-seq
56
total RNA-seq
30
DNase-seq
9
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
181
DNA accessibility
159
Transcription
152
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
115
histone
115
histone modification
61
narrow histone mark
54
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
20
May, 2021
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
March, 2020
1
November, 2018
Available data
416
bam
377
bigWig
240
fastq
172
bed narrowPeak
166
tsv
100
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
bed bed3
1
bedpe bed3+
1
tar
Organism
509
Homo sapiens
Biosample type
2338
tissue
614
cell line
509
primary cell
335
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
509
AMP
Genome assembly (visualization)
397
hg19
333
GRCh38
Lab
509
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
509 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
small RNA-seq
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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