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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
269
DNA binding
231
DNA accessibility
57
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
21
February, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
602
bigWig
596
bam
382
fastq
286
bed narrowPeak
268
tsv
132
zippedFastqFolder
100
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1018
Homo sapiens
Biosample type
2588
tissue
1018
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
545
AMP
276
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
616
hg19
525
GRCh38
Lab
510
AMP-T2D consortium
276
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
month_released!
April, 2019
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
1018 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
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