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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
287
DNA accessibility
269
DNA binding
57
DNA methylation
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
33
October, 2019
24
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
598
bigWig
596
bam
409
fastq
286
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
1064
Homo sapiens
Biosample type
2684
tissue
1064
primary cell
658
cell line
390
in vitro differentiated cells
10
stem cell
Organ
399
epithelium
343
pancreas
38
connective tissue
36
kidney
33
vasculature
27
blood vessel
20
vein
18
brain
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
539
AMP
321
HPAP
204
T1D
Genome assembly (visualization)
607
hg19
524
GRCh38
Lab
504
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
month_released!
August, 2022
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
1064 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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