Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
67
Transcription
3
DNA accessibility
Date released
February, 2021
57
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
2748
bam
2536
bigWig
1722
bed narrowPeak
1294
fastq
1032
tsv
989
bigBed narrowPeak
361
tagAlign
272
bed broadPeak
252
bigBed broadPeak
237
bed bed3+
153
zippedFastqFolder
71
txt
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
70
Homo sapiens
Biosample type
67
tissue
3
in vitro differentiated cells
1
cell line
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
musculature of body
Project
71
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
musculature of body
month_released!
October, 2017
February, 2021
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
Download