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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
295
ChIP-seq
159
DNase-seq
89
total RNA-seq
9
WGBS
5
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
295
DNA binding
165
DNA accessibility
89
Transcription
11
DNA methylation
Target of assay
191
histone modification
190
histone
101
broad histone mark
88
narrow histone mark
53
control
51
transcription factor
12
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
457
bam
428
bigWig
298
bed narrowPeak
285
fastq
211
bigBed narrowPeak
187
bed bed3+
182
bed broadPeak
169
bigBed broadPeak
89
tsv
70
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
553
Homo sapiens
Biosample type
389
tissue
103
primary cell
68
in vitro differentiated cells
Organ
192
pancreas
143
connective tissue
81
kidney
musculature of body
58
adipose tissue
56
liver
49
epithelium
35
heart
32
limb
30
brain
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
560
AMP
Genome assembly (visualization)
418
GRCh38
407
hg19
Lab
560
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
560 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
42
1
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
heart
18
pancreas
14
2
+ See 37 more…
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cardiac fibroblast
5
3
+ See 20 more…
in vitro differentiated cells
adipocyte
67
1
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