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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
DNase-seq
7
WGBS
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
406
November, 2017
296
August, 2017
284
October, 2019
245
August, 2021
217
May, 2021
175
June, 2019
172
May, 2022
170
February, 2021
151
May, 2020
113
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
56
July, 2019
49
April, 2018
48
July, 2018
47
September, 2018
47
September, 2023
46
March, 2020
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
7
August, 2020
7
January, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
113
fastq
112
bam
101
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
113
Homo sapiens
Biosample type
79
cell line
33
tissue
1
primary cell
Organ
53
liver
33
blood
33
bodily fluid
16
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
113
AMP
Genome assembly (visualization)
100
GRCh38
92
hg19
Lab
113
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
musculature of body
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
33
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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