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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
42
total RNA-seq
16
small RNA-seq
14
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
113
DNA binding
61
Transcription
25
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
54
broad histone mark
32
narrow histone mark
25
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
190
bam
171
bigWig
98
bed narrowPeak
93
bigBed narrowPeak
61
tsv
21
bed bedMethyl
21
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
211
Homo sapiens
Biosample type
178
tissue
33
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
18
connective tissue
18
epithelium
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
8
pancreas
2
pericardium
1
eye
Project
211
AMP
Genome assembly (visualization)
177
hg19
165
GRCh38
Lab
211
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
musculature of body
month_released!
November, 2020
BIOSAMPLE
ASSAY
211 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 25 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 18 more…
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