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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
154
DNase-seq
100
ATAC-seq
71
ChIP-seq
1
pCHi-C
Assay category
254
DNA accessibility
190
Transcription
71
DNA binding
Target of assay
38
histone
38
histone modification
34
narrow histone mark
29
control
4
RNA binding protein
4
broad histone mark
4
transcription factor
Date released
715
February, 2021
406
November, 2017
399
May, 2021
385
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
205
February, 2023
198
May, 2022
175
June, 2019
168
July, 2018
113
May, 2019
98
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
458
bam
429
bigWig
196
bed narrowPeak
189
tsv
169
bigBed narrowPeak
154
bed bed3+
154
bed broadPeak
154
bigBed broadPeak
50
tagAlign
Organism
516
Homo sapiens
Biosample type
324
tissue
191
primary cell
1
cell line
Organ
196
liver
81
kidney
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
471
AMP
45
T1D
Genome assembly (visualization)
406
hg19
376
GRCh38
Lab
471
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
516 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
kidney
13
brain
12
renal cortex interstitium
11
+ See 31 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
mesenchymal stem cell
7
+ See 44 more…
cell line
HepG2
1
See all biosamples
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