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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
217
ATAC-seq
173
single cell RNA-seq
134
total RNA-seq
87
RNA microarray
27
snATAC-seq
24
pCHi-C
11
WGBS
10
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
307
Transcription
282
DNA binding
245
DNA accessibility
18
DNA methylation
10
3D chromatin structure
Target of assay
183
control
100
histone
100
histone modification
54
narrow histone mark
46
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
101
February, 2021
95
February, 2023
93
August, 2017
82
October, 2019
47
September, 2023
44
May, 2022
29
October, 2018
26
March, 2020
25
November, 2017
23
February, 2020
23
May, 2020
21
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
10
July, 2019
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1863
bam
bigWig
1069
tsv
933
bed narrowPeak
523
bigBed narrowPeak
375
fastq
223
tagAlign
172
bed bed3+
168
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
977
Homo sapiens
Biosample type
980
tissue
464
primary cell
135
in vitro differentiated cells
134
cell line
7
stem cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
885
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
103
hg19
Lab
689
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
organ_slims!
musculature of body
blood
files.file_type!
bigWig
BIOSAMPLE
ASSAY
980 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
3
1
1
bone element
84
coronary artery
2
35
1
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