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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
982
total RNA-seq
851
ChIP-seq
184
ATAC-seq
109
single cell RNA-seq
85
RNA microarray
78
DNase-seq
26
WGBS
24
pCHi-C
21
snATAC-seq
14
small RNA-seq
9
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1105
Transcription
851
DNA binding
286
DNA accessibility
32
DNA methylation
9
3D chromatin structure
Target of assay
583
histone modification
582
histone
305
narrow histone mark
277
broad histone mark
177
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
258
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
108
May, 2019
101
August, 2021
95
February, 2023
82
November, 2017
74
October, 2018
66
July, 2019
64
May, 2022
63
June, 2019
57
April, 2019
48
December, 2017
40
May, 2021
40
May, 2024
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
1
August, 2022
1
January, 2018
1
May, 2023
Available data
1765
bam
1624
bigWig
1057
tsv
780
bed narrowPeak
436
bigBed narrowPeak
375
fastq
223
tagAlign
104
bed bed3+
100
bed broadPeak
94
txt
76
bigBed broadPeak
21
bed bedMethyl
21
bigBed bedMethyl
8
bedpe bed3+
8
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2387
Homo sapiens
Biosample type
2396
tissue
1030
primary cell
582
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2346
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1652
GRCh38
1602
hg19
Lab
2233
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
1
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
musculature of body
blood
kidney
BIOSAMPLE
ASSAY
2396 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
DNase-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
298
71
68
1
4
7
3
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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