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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
9
ATAC-seq
8
snATAC-seq
6
total RNA-seq
4
DNase-seq
Assay category
119
DNA binding
21
DNA accessibility
6
Transcription
Target of assay
51
transcription factor
44
histone
44
histone modification
30
broad histone mark
22
control
14
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
6
February, 2021
2
February, 2020
1
January, 2018
Available data
134
bam
108
bed narrowPeak
107
bigWig
100
bigBed narrowPeak
60
fastq
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
146
Homo sapiens
Biosample type
77
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
8
T1D
Genome assembly (visualization)
113
hg19
112
GRCh38
Lab
138
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
DNase-seq
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 4 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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