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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
86
ChIP-seq
13
single cell RNA-seq
10
snATAC-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
5
pCHi-C
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
86
DNA binding
26
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
57
August, 2017
23
October, 2018
19
April, 2020
18
July, 2019
18
June, 2019
6
November, 2020
3
March, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
534
bam
513
bigWig
474
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
605
Homo sapiens
Biosample type
567
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
587
AMP
19
LungMap
1
T1D
Genome assembly (visualization)
516
hg19
512
GRCh38
Lab
587
AMP-T2D consortium
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
musculature of body
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
607 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
lung
9
10
1
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primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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