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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
58
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
37
histone
37
histone modification
20
broad histone mark
18
control
17
narrow histone mark
3
transcription factor
Date released
43
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
78
bam
60
bigWig
41
bed narrowPeak
27
fastq
26
bigBed narrowPeak
19
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
44
tissue
29
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
1
hg18
Lab
81
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
5
2
1
islet of Langerhans
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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