Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
591
ChIP-seq
257
ATAC-seq
173
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
591
DNA binding
434
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
603
histone modification
602
histone
315
narrow histone mark
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
203
October, 2019
197
August, 2017
193
May, 2020
131
June, 2019
120
July, 2018
95
February, 2023
70
July, 2019
64
May, 2022
56
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
May, 2021
40
November, 2017
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
20
May, 2024
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
January, 2019
3
March, 2019
1
August, 2022
1
January, 2018
Available data
1644
bam
1474
bigWig
1069
tsv
692
bed narrowPeak
329
fastq
323
bigBed narrowPeak
166
bed bed3+
156
txt
155
bed broadPeak
155
tagAlign
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2401
Homo sapiens
Biosample type
2406
tissue
956
primary cell
643
cell line
338
in vitro differentiated cells
9
stem cell
Organ
527
connective tissue
468
adipose tissue
462
pancreas
336
liver
289
kidney
256
heart
195
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
musculature of body
59
artery
56
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2309
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1578
GRCh38
1507
hg19
Lab
2076
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
musculature of body
target.investigated_as!
broad histone mark
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
2406 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
57
66
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
+ See 168 more…
See all biosamples
Download