Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
73
DNA binding
4
DNA accessibility
Target of assay
52
histone
52
histone modification
49
transcription factor
broad histone mark
24
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
14
August, 2017
2
October, 2017
1
March, 2019
Available data
2965
bam
2690
bigWig
1591
tsv
1353
bed narrowPeak
1238
fastq
761
bigBed narrowPeak
248
bed broadPeak
244
tagAlign
236
bigBed broadPeak
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
50
cell line
14
primary cell
12
tissue
1
in vitro differentiated cells
Organ
50
liver
11
brain
6
pancreas
musculature of body
4
epithelium
4
vasculature
2
blood vessel
2
connective tissue
1
adipose tissue
Project
77
AMP
Genome assembly (visualization)
76
hg19
57
GRCh38
Lab
75
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
organ_slims!
musculature of body
target.investigated_as!
broad histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
77 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
50
primary cell
skeletal muscle myoblast
7
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
tissue
islet of Langerhans
2
2
pancreas
2
brain
1
caudate nucleus
1
cingulate gyrus
1
+ See 3 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download