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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1521
total RNA-seq
1331
ChIP-seq
530
ATAC-seq
361
single cell RNA-seq
179
DNase-seq
85
RNA microarray
74
WGBS
56
pCHi-C
55
snATAC-seq
24
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
Transcription
Date released
16
July, 2019
1
October, 2022
Available data
16
bam
16
bigWig
16
tsv
1
txt
Organism
16
Homo sapiens
Biosample type
15
tissue
1
cell line
1
primary cell
Organ
4
brain
3
adipose tissue
3
connective tissue
3
liver
musculature of body
2
pancreas
1
heart
1
kidney
Project
17
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
17
AMP-T2D consortium
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
17 results
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small RNA-seq
MPRA
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 8 more…
cell line
MIN6
1
primary cell
mesenchymal stem cell of adipose
1
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