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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1521
total RNA-seq
1331
ChIP-seq
528
ATAC-seq
361
single cell RNA-seq
179
DNase-seq
85
RNA microarray
74
WGBS
56
pCHi-C
55
snATAC-seq
24
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
55
DNA accessibility
Date released
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
Available data
21
zippedFastqFolder
Organism
54
Homo sapiens
Biosample type
29
primary cell
26
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
6
kidney
Project
21
HPAP
18
T1D
10
LungMap
6
AMP
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
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musculature of body
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narrow histone mark
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Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
55 results
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snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
kidney
6
pancreas
4
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