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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
Assay category
72
Transcription
3
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
February, 2023
6
May, 2022
1
October, 2022
Available data
2928
bam
2664
bigWig
1591
tsv
1331
bed narrowPeak
1238
fastq
844
bigBed narrowPeak
252
bed broadPeak
238
bigBed broadPeak
226
bed bed3+
214
tagAlign
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
159
Homo sapiens
Biosample type
156
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
musculature of body
Project
160
AMP
Genome assembly (visualization)
3
hg19
Lab
94
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
5
audit script error
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
160 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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