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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1741
ChIP-seq
1335
total RNA-seq
413
ATAC-seq
296
single cell RNA-seq
126
DNase-seq
78
snATAC-seq
75
WGBS
48
pCHi-C
28
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
126
DNA accessibility
Date released
106
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
125
bam
125
bed narrowPeak
125
bigBed narrowPeak
125
bigWig
123
bed broadPeak
123
bigBed broadPeak
121
bed bed3+
12
fastq
Organism
126
Homo sapiens
Biosample type
107
tissue
17
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
35
limb
32
brain
32
musculature of body
29
heart
18
epithelium
18
ureter
10
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
nerve
2
vein
1
spleen
Project
126
AMP
Genome assembly (visualization)
123
GRCh38
109
hg19
Lab
126
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
nerve
kidney
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
126 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
12
body of pancreas
4
+ See 30 more…
primary cell
cardiac fibroblast
2
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 9 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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