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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
963
ChIP-seq
490
total RNA-seq
269
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
20
pCHi-C
15
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
16
May, 2021
March, 2020
2
February, 2021
1
August, 2018
1
May, 2020
Available data
2
bed bed3+
1
bam
1
bedpe bed3+
1
fastq
1
tsv
Organism
20
Homo sapiens
Biosample type
17
primary cell
tissue
2
cell line
1
in vitro differentiated cells
Organ
3
connective tissue
2
liver
1
adipose tissue
1
bone element
1
bone marrow
Project
16
T1D
4
AMP
Genome assembly (visualization)
2
hg19
Lab
16
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
nerve
biosample_type!
tissue
month_released!
March, 2020
BIOSAMPLE
ASSAY
20 results
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pCHi-C
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
cell line
HepG2
2
in vitro differentiated cells
white fat cell
1
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