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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
DNase-seq
50
ChIP-seq
17
Hi-C
4
ATAC-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
180
DNA accessibility
50
DNA binding
17
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
163
June, 2019
33
August, 2017
15
December, 2017
11
March, 2020
9
November, 2018
7
October, 2019
4
August, 2021
4
February, 2023
2
November, 2019
2
September, 2017
1
August, 2018
1
February, 2021
1
May, 2022
Available data
2741
bam
2525
bigWig
1495
bed narrowPeak
1325
tsv
949
fastq
907
bigBed narrowPeak
298
tagAlign
271
bed broadPeak
234
bed bed3+
234
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
213
tissue
primary cell
32
in vitro differentiated cells
5
cell line
3
stem cell
Organ
68
kidney
36
limb
35
musculature of body
33
pancreas
30
heart
27
brain
20
connective tissue
18
ureter
9
liver
7
adipose tissue
6
blood vessel
6
vasculature
4
artery
3
embryo
3
eye
nerve
1
epithelium
1
spleen
Project
253
AMP
Genome assembly (visualization)
235
hg19
226
GRCh38
Lab
249
AMP-T2D consortium
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
organ_slims!
nerve
biosample_type!
primary cell
BIOSAMPLE
ASSAY
253 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
pCHi-C
Capture-C
snATAC-seq
tissue
islet of Langerhans
21
2
heart
18
1
muscle of arm
17
brain
14
kidney
13
+ See 43 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
cardiomyocytes (cardiac muscle cell)
2
1
definitive endodermal cell
3
pancreatic endoderm
3
+ See 7 more…
cell line
HepG2
1
1
Panc1
1
1
EndoC_BH1
1
stem cell
hESC
3
See all biosamples
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