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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
34
DNase-seq
8
ATAC-seq
8
snATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
91
DNA binding
50
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
51
transcription factor
26
histone
26
histone modification
18
broad histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
8
narrow histone mark
Date released
32
June, 2019
27
December, 2018
27
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
January, 2018
Available data
132
bam
119
bed narrowPeak
115
bigWig
112
bigBed narrowPeak
60
fastq
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
148
Homo sapiens
Biosample type
79
tissue
61
cell line
8
primary cell
Organ
946
pancreas
791
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
140
AMP
8
T1D
Genome assembly (visualization)
120
hg19
119
GRCh38
Lab
140
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
organ_slims!
nerve
biosample_type!
stem cell
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 8 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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