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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
301
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
51
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1221
Transcription
301
DNA binding
80
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
176
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
163
August, 2021
120
July, 2018
76
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
24
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
4
December, 2018
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1865
bam
1741
bigWig
1070
tsv
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1770
Homo sapiens
Biosample type
1773
tissue
793
primary cell
262
in vitro differentiated cells
238
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
378
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1678
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
972
hg19
971
GRCh38
Lab
1567
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
organ_slims!
nerve
files.file_type!
bed narrowPeak
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
1773 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
291
51
6
30
7
4
1
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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