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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
903
total RNA-seq
687
ChIP-seq
175
DNase-seq
63
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
919
Transcription
687
DNA binding
242
DNA accessibility
17
DNA methylation
Target of assay
442
histone modification
441
histone
235
narrow histone mark
206
broad histone mark
156
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
170
August, 2017
163
June, 2019
144
October, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1865
bam
1701
bigWig
1071
tsv
917
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1858
Homo sapiens
Biosample type
1865
tissue
609
primary cell
582
cell line
291
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1863
AMP
2
T1D
Genome assembly (visualization)
1672
GRCh38
1617
hg19
Lab
1840
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
nerve
BIOSAMPLE
ASSAY
1865 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
272
30
1
38
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
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