Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
676
ChIP-seq
614
total RNA-seq
214
ATAC-seq
147
DNase-seq
87
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
21
pCHi-C
13
Hi-C
13
WGBS
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
714
Transcription
676
DNA binding
393
DNA accessibility
23
DNA methylation
13
3D chromatin structure
Target of assay
477
histone modification
476
histone
266
narrow histone mark
210
broad histone mark
136
control
65
transcription factor
13
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
227
August, 2017
193
May, 2020
191
October, 2019
159
February, 2021
136
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
66
May, 2022
58
February, 2023
51
October, 2018
48
December, 2017
47
July, 2019
47
September, 2023
39
November, 2019
38
May, 2021
32
March, 2020
25
November, 2018
23
April, 2019
22
October, 2017
19
April, 2020
19
February, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1293
bam
1161
bigWig
771
bed narrowPeak
561
tsv
437
bigBed narrowPeak
334
fastq
230
tagAlign
181
bed broadPeak
170
bed bed3+
157
txt
145
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1925
Homo sapiens
Biosample type
1933
tissue
1073
primary cell
596
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
adipose tissue
361
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1836
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1215
GRCh38
1187
hg19
Lab
1621
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
nerve
heart
adipose tissue
BIOSAMPLE
ASSAY
1933 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
1
6
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
3
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
bone tissue
58
+ See 153 more…
See all biosamples
Download