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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
728
total RNA-seq
632
ChIP-seq
158
ATAC-seq
142
DNase-seq
87
RNA microarray
81
single cell RNA-seq
21
pCHi-C
17
snATAC-seq
15
WGBS
13
small RNA-seq
9
Hi-C
8
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
822
Transcription
632
DNA binding
319
DNA accessibility
23
DNA methylation
9
3D chromatin structure
Target of assay
436
histone modification
435
histone
246
narrow histone mark
189
broad histone mark
131
control
65
transcription factor
10
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
193
May, 2020
189
October, 2019
137
August, 2017
135
August, 2021
132
June, 2019
92
May, 2019
82
November, 2017
51
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
41
February, 2023
24
March, 2020
23
April, 2019
23
October, 2018
20
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
2
January, 2018
1
May, 2021
1
November, 2019
Available data
1304
bam
1211
bigWig
685
tsv
661
bed narrowPeak
385
bigBed narrowPeak
222
tagAlign
164
bed broadPeak
164
fastq
151
txt
149
bed bed3+
141
bigBed broadPeak
64
xls
12
bed bedMethyl
12
bigBed bedMethyl
6
csv
5
bed bed3
5
hic
4
bedpe bed3+
1
tagAlign bed3+
Organism
1914
Homo sapiens
Biosample type
1916
tissue
729
primary cell
504
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1849
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1251
GRCh38
1198
hg19
Lab
1667
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
nerve
heart
pancreas
BIOSAMPLE
ASSAY
1916 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
bone tissue
58
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