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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
797
ChIP-seq
257
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1222
Transcription
797
DNA binding
291
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
534
histone modification
533
histone
286
narrow histone mark
247
broad histone mark
176
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
229
August, 2021
198
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
80
April, 2019
77
July, 2019
76
November, 2017
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
24
February, 2020
19
April, 2020
19
October, 2017
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1865
bam
1701
bigWig
1071
tsv
917
bed narrowPeak
535
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2480
Homo sapiens
Biosample type
2483
tissue
1039
primary cell
603
cell line
393
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
485
adipose tissue
485
pancreas
358
liver
246
heart
231
kidney
229
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2386
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1599
GRCh38
1530
hg19
Lab
2173
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
24
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
nerve
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
2483 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
65
66
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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