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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
ChIP-seq
395
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
29
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
263
Transcription
58
DNA methylation
Date released
106
August, 2021
75
May, 2022
47
September, 2023
40
September, 2020
24
February, 2021
9
April, 2020
7
August, 2017
4
July, 2019
3
December, 2019
3
May, 2023
1
February, 2023
1
November, 2018
1
September, 2018
Available data
211
tsv
145
fastq
118
bam
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
321
Homo sapiens
Biosample type
185
tissue
134
primary cell
2
in vitro differentiated cells
Organ
95
heart
64
kidney
47
epithelium
47
pancreas
9
lung
7
blood vessel
7
vasculature
5
liver
4
adipose tissue
4
connective tissue
2
artery
1
musculature of body
Project
133
AMP
132
HPAP
47
KPMP
9
LungMap
Lab
132
Klaus Kaestner, Upenn
122
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
organ_slims!
nerve
files.file_type!
bigWig
BIOSAMPLE
ASSAY
321 results
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single cell RNA-seq
WGBS
tissue
kidney
64
heart left ventricle
18
2
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 16 more…
primary cell
Langerhans cell
85
pancreatic alpha cell
31
pancreatic beta cell
16
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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