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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
6
Hi-C
2
DNase-seq
1
DNAme array
1
RRBS
Assay category
182
Transcription
180
DNA accessibility
49
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
11
October, 2019
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
591
bam
bigWig
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
466
Homo sapiens
Biosample type
979
tissue
466
primary cell
140
cell line
135
in vitro differentiated cells
7
stem cell
Organ
169
epithelium
154
pancreas
8
blood
8
bodily fluid
7
blood vessel
7
vasculature
7
vein
6
connective tissue
5
kidney
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
314
HPAP
127
AMP
24
T1D
1
ITG
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
314
Klaus Kaestner, Upenn
127
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
14
inconsistent ontology term
organ_slims!
nerve
files.file_type!
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
466 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
DNase-seq
DNAme array
RRBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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