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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
20
DNA binding
4
DNA methylation
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
4
July, 2019
3
February, 2020
3
March, 2020
2
June, 2019
Available data
bigWig
211
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
bedpe bed3+
3
hic
Organism
166
Homo sapiens
Biosample type
153
tissue
10
cell line
3
primary cell
Organ
316
pancreas
223
kidney
218
epithelium
167
liver
166
heart
113
connective tissue
101
bone element
79
vasculature
78
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
nerve
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
166
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
nerve
files.file_type!
bigWig
bedpe bed3+
BIOSAMPLE
ASSAY
166 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
2
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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